Index of /~xzhuo/sv_paper

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]revision/2020-10-17 15:22 -  
[TXT]Table2.txt2020-01-22 16:30 352  
[TXT]Figure2.txt2019-11-28 00:56 758  
[ ]intersect_promoter.pdf2019-03-12 16:11 4.9K 
[ ]Supp_Fig1.pdf2018-12-31 14:22 4.9K 
[ ]intersect_enhancer.pdf2019-03-12 16:11 4.9K 
[ ]table2_plot.pdf2020-01-22 16:55 5.2K 
[ ]CNCC_K27ac_MEI.pdf2018-12-19 16:14 5.5K 
[ ]rough_count_perc.pdf2019-04-11 11:08 5.5K 
[ ]enhancer_flankingSize.pdf2019-11-20 16:53 5.6K 
[ ]chimp_enhancer_flankingSize.pdf2019-11-20 16:54 5.6K 
[ ]iPSC_K27ac_MEI.pdf2018-07-16 12:16 5.6K 
[ ]rough_count_up.pdf2019-01-17 13:02 5.7K 
[ ]chimp_K9me3_length.pdf2019-12-12 11:30 5.7K 
[ ]human_K9me3_length.pdf2019-12-12 03:05 5.7K 
[ ]rough_count_down.pdf2019-01-17 13:03 5.8K 
[ ]count_human_down.pdf2019-01-16 12:36 6.5K 
[ ]count_human_up.pdf2019-01-16 12:35 6.5K 
[ ]count_chimp_up.pdf2019-01-16 12:35 6.6K 
[ ]count_chimp_down.pdf2019-01-16 12:35 6.6K 
[ ]CNCC_K27ac_noTE.pdf2018-12-19 16:14 6.8K 
[ ]iPSC_K27ac_noTE.pdf2018-07-16 12:16 6.9K 
[ ]humanChimp.lite.json2020-12-18 16:00 7.5K 
[ ]peak_count.pdf2019-08-06 11:17 8.0K 
[ ]chimp_K9me3_flankingSize.pdf2019-11-20 16:53 8.4K 
[ ]perk_matrix.pdf2019-06-19 15:23 8.6K 
[ ]enrichment_pt_down.pdf2019-01-07 16:18 9.1K 
[ ]enrichment_pt_up.pdf2019-01-07 16:18 9.1K 
[ ]enrichment_hg_up.pdf2019-01-14 10:14 9.7K 
[ ]enrichment_hg_up_log.pdf2019-01-14 10:37 9.7K 
[ ]enrichment_hg_down.pdf2019-01-14 10:24 9.7K 
[ ]enrichment_pt_down_log.pdf2019-01-14 10:59 9.8K 
[ ]enrichment_hg_down_log.pdf2019-01-14 10:37 9.8K 
[ ]enrichment_pt_up_log.pdf2019-01-14 10:59 9.8K 
[ ]H3K9me3_flankingSize.pdf2019-11-20 16:52 10K 
[ ]volcano_noK9me3.pdf2019-04-16 14:43 10K 
[ ]volcano.pdf2019-04-12 10:37 12K 
[ ]hg38_all_SVA1000_CNCC_K27ac.sort.fa2019-01-17 16:40 21K 
[ ]CRELength.pdf2020-07-04 10:40 21K 
[ ]deep_fisher.pdf2019-12-13 11:21 22K 
[ ]new_fisher.pdf2020-02-29 00:01 23K 
[ ]Figure2.pdf2019-12-02 08:53 25K 
[IMG]hg38_INS_pt_SVA_both_K27ac.png2018-08-13 11:22 33K 
[IMG]panTro5_INS_hg_SVA_both_K27ac.png2018-08-13 11:22 33K 
[IMG]panTro5_INS_hg_LTR5_both_K27ac.png2018-08-13 11:22 40K 
[IMG]hg38_INS_pt_LTR5_both_K27ac.png2018-08-13 11:22 42K 
[IMG]panTro5_INS_pt_SVA_both_K27ac.png2018-08-13 11:22 42K 
[IMG]hg38_INS_hg_SVA_both_K27ac.png2018-08-13 11:22 43K 
[IMG]hg38_INS_hg_LTR5_both_K27ac.png2018-08-13 11:22 52K 
[IMG]hg38_INS_pt_LTR5_CNCC_K27ac.png2018-08-03 13:13 60K 
[IMG]panTro5_INS_pt_LTR5_both_K27ac.png2018-08-13 11:22 60K 
[IMG]hg38_INS_pt_LTR5_iPSC_K27ac.png2018-08-03 13:13 63K 
[IMG]panTro5_INS_pt_LTR5_CNCC_K27ac.png2018-08-03 13:13 67K 
[IMG]panTro5_INS_hg_LTR5_Hs_CNCC_K27ac.png2018-08-03 13:13 70K 
[IMG]panTro5_INS_pt_LTR5_iPSC_K27ac.png2018-08-03 13:13 71K 
[IMG]hg38_INS_hg_LTR5_Hs_CNCC_K27ac.png2018-08-03 13:13 73K 
[IMG]panTro5_INS_hg_LTR5_iPSC_K27ac.png2018-08-03 13:13 74K 
[IMG]hg38_INS_pt_PTERV_CNCC_K27ac.png2018-08-03 13:13 74K 
[IMG]hg38_INS_pt_PTERV_iPSC_K27ac.png2018-08-03 13:13 75K 
[IMG]hg38_INS_hg_LTR5_iPSC_K27ac.png2018-08-03 13:13 77K 
[IMG]panTro5_INS_pt_PTERV_CNCC_K27ac.png2018-08-03 13:13 81K 
[IMG]panTro5_INS_pt_PTERV_iPSC_K27ac.png2018-08-03 13:13 85K 
[IMG]hg38_LTR5_both_K27ac_profile.png2018-08-20 10:58 90K 
[ ]TE_lineage_sorting.pdf2019-01-21 09:43 95K 
[ ]indel_contribution.pdf2019-04-16 14:12 101K 
[IMG]panTro5_LTR5_both_K27ac_profile.png2018-08-20 10:57 103K 
[IMG]hg38_all_SVA_split_CNCC_K27ac.png2018-08-13 12:10 110K 
[IMG]hg38_share_SVA_D_CNCC_K27ac.png2018-08-22 16:20 112K 
[IMG]panTro5_all_SVA_split_CNCC_K27ac.png2018-08-13 12:10 116K 
[ ]indel_perc_slide.pdf2019-04-18 14:28 116K 
[ ]enrichment_chimp.pdf2019-01-14 11:04 123K 
[ ]peak_enrichment_matrix.pdf2019-06-19 15:49 124K 
[ ]enrichment_human.pdf2019-01-14 10:56 126K 
[ ]CNCC_K4me3_MEI.pdf2019-01-03 15:17 126K 
[ ]enrichment_chimp_star.pdf2019-03-25 12:38 129K 
[ ]enrichment_human_star.pdf2019-03-25 12:39 130K 
[ ]CNCC_enhancer_MEI.pdf2019-01-03 15:49 134K 
[ ]iPSC_K9me3_MEI.pdf2019-01-04 15:51 137K 
[ ]hg38.SVA.human_K27acpeak.aln.fa2019-01-17 16:44 139K 
[IMG]hg38_INS_pt_SVA_iPSC_K27ac.png2018-08-03 13:13 145K 
[ ]rough_count.pdf2019-01-17 13:56 148K 
[IMG]panTro5_INS_pt_SVA_CNCC_K27ac.png2018-08-03 13:13 151K 
[IMG]hg38_INS_pt_SVA_CNCC_K27ac.png2018-08-03 13:13 151K 
[IMG]hg38_pt_SVA_K27ac.png2018-07-30 13:20 151K 
[IMG]panTro5_INS_pt_SVA_iPSC_K27ac.png2018-08-03 13:13 155K 
[ ]count_human.pdf2019-01-16 14:16 172K 
[ ]CNCC_K4me3_noTE.pdf2019-01-03 15:10 173K 
[ ]count_chimp.pdf2019-01-16 15:16 178K 
[ ]New_enrichment_1k.pdf2020-01-22 15:36 181K 
[ ]K4me3_enrichment_human1k.pdf2018-12-07 16:09 182K 
[ ]K4me3_enrichment_human1k_CGI.pdf2018-12-07 16:10 182K 
[ ]CNCC_enhancer_noTE.pdf2019-01-04 16:18 185K 
[ ]iPSC_K9me3_noTE.pdf2019-01-04 16:11 192K 
[IMG]hg38_INS_hg_SVA_iPSC_K27ac.png2018-08-03 13:13 200K 
[IMG]panTro5_INS_hg_SVA_CNCC_K27ac.png2018-08-03 13:13 207K 
[IMG]hg38_INS_hg_SVA_CNCC_K27ac.png2018-08-03 13:13 226K 
[IMG]hg38_hg_SVA_K27ac.png2018-07-30 13:20 226K 
[IMG]panTro5_INS_hg_SVA_iPSC_K27ac.png2018-08-03 13:13 236K 
[ ]count_enrichment_all.pdf2019-01-17 13:54 301K 
[ ]1k.withgene.pdf2019-12-14 14:17 376K 
[ ]panTro5_INS_hg_slide.pdf2019-04-17 10:56 376K 
[ ]indel_withgene.pdf2019-12-14 14:45 377K 
[ ]hg38_INS_pt_slide.pdf2019-04-17 10:56 377K 
[ ]panTro5_INS_pt_slide.pdf2019-04-17 10:56 379K 
[ ]hg38_INS_hg_slide.pdf2019-04-17 10:56 379K 
[ ]hg38_INS_hg_humanK9me3peak.pdf2019-07-11 11:25 385K 
[ ]panTro5.INS_hg.human_enhancer.pdf2019-11-17 10:38 399K 
[ ]hg38.INS_pt.chimp_enhancer.pdf2019-11-17 10:37 410K 
[ ]panTro5.INS_hg.human_enhancer.descLength.pdf2019-11-04 10:24 411K 
[ ]panTro5.INS_pt.chimp_enhancer.pdf2019-11-17 10:37 411K 
[ ]hg38.INS_hg.human_enhancer.pdf2019-11-17 10:38 413K 
[ ]hg38.SVA.target_2.pdf2019-09-26 14:47 416K 
[ ]hg38_all_SVA800_CNCC_K27ac_NR2F1.pdf2020-01-27 16:57 423K 
[ ]hg38_all_SVA1000_CNCC_K27ac_K9me3.pdf2019-01-17 16:38 423K 
[ ]hg38.INS_hg.human_enhancer.flanking.pdf2019-08-26 10:37 429K 
[ ]hg38.INS_hg.human_enhancer.descLength.pdf2019-11-04 10:24 432K 
[ ]hg38_all_SVA800_CNCC_K27ac_K9me3.pdf2019-01-17 16:38 434K 
[ ]hg38_all_SVA800_CNCC_K27ac_NR2F1_K9me3.pdf2019-09-26 13:37 463K 
[ ]hg38.INS_pt.chimp_K9me3.pdf2019-11-17 10:37 521K 
[ ]panTro5.INS_pt.chimp_K9me3.pdf2019-11-17 10:36 553K 
[ ]panTro5.INS_hg.human_K9me3.pdf2019-11-17 10:37 574K 
[ ]panTro5.INS_pt.TEs.chimp_K9me3.flanking.pdf2019-10-28 10:40 618K 
[ ]hg38.INS_hg.human_K9me3.pdf2019-11-17 10:37 659K 
[ ]hg38_INS_pt_both_all_heatmap.pdf2019-09-26 11:16 710K 
[ ]hg38.INS_hg.TEs.human_K9me3.flanking.pdf2019-10-28 10:40 731K 
[ ]panTro5_INS_pt_both_all_heatmap.pdf2019-09-26 11:16 733K 
[ ]OrthoINDELbenchmark.pdf2020-07-02 15:54 768K 
[ ]CNCC_K27ac_lineage_peaks.ai2018-12-19 15:54 783K 
[ ]CNCC_K4me3_lineage_peaks.ai2018-12-19 15:51 783K 
[ ]CNCC_enhancer_lineage_peaks.ai2018-12-19 16:07 784K 
[ ]iPSC_K9me3_lineage_peaks.ai2018-12-19 15:59 786K 
[ ]panTro5.INS_pt.chimp_K9me3.flanking.pdf2019-09-23 09:29 788K 
[ ]hg38_INS_pt_CNCC_all_heatmap.pdf2019-01-21 14:01 800K 
[ ]panTro5_INS_hg_both_all_heatmap.pdf2019-09-26 11:16 813K 
[ ]CRE_Number.pdf2019-11-11 10:14 824K 
[ ]CNCC_K4me3_lineage_peaks.pdf2018-12-19 15:51 824K 
[ ]CNCC_K27ac_lineage_peaks.pdf2018-12-19 15:54 825K 
[ ]CNCC_enhancer_lineage_peaks.pdf2018-12-19 16:07 825K 
[ ]iPSC_K9me3_lineage_peaks.pdf2018-12-19 15:59 826K 
[ ]supp_Fig_1.pdf2018-07-12 15:46 835K 
[ ]Fig_1.pdf2019-03-13 11:09 848K 
[ ]panTro5_INS_pt_CNCC_all_heatmap.pdf2019-01-21 14:01 849K 
[ ]hg38_LTR5_both_K27ac_K9me3.pdf2019-01-17 16:25 858K 
[ ]Fig4d_SVA.pdf2019-02-14 08:48 896K 
[ ]panTro5_INS_hg_CNCC_all_heatmap.pdf2019-01-21 14:01 968K 
[ ]human_insertion_descsize_enhancer.pdf2019-08-28 12:41 1.0M 
[ ]hg38_INS_hg_both_all_heatmap.pdf2019-09-26 11:16 1.0M 
[ ]hg38_LTR5_K4me3_K27ac_K9me3.pdf2019-09-26 12:34 1.1M 
[ ]panTro5.INS_hg.human_K9me3.descLength.pdf2019-08-26 15:31 1.1M 
[ ]hg38_INS_hg_CNCC_all_heatmap.pdf2019-01-21 14:01 1.2M 
[ ]hg38_SVAA2D_both_K27ac_K9me3.pdf2019-01-17 16:25 1.2M 
[ ]hg38.INS_hg.human_K9me3.flanking.pdf2019-09-23 09:29 1.3M 
[ ]hg38.INS_hg.human_K9me3.descLength.pdf2019-08-26 15:31 1.3M 
[IMG]hg38_SVAA2D_both_K27ac_K9me3.png2018-12-21 15:09 1.4M 
[ ]panTro5_all_SVA_CNCC_K27ac_K9me3.pdf2019-01-17 16:29 1.4M 
[ ]hg38_all_SVA_CNCC_K27ac_K9me3.pdf2019-01-17 16:29 1.5M 
[ ]hg38_SVAA2D_K4me3_K27ac_K9me3.pdf2019-09-26 12:32 1.5M 
[ ]hg38_all_SVA_CNCC_K27ac_NR2F1.pdf2020-01-27 16:57 1.6M 
[ ]hg38_all_SVA_CNCC_K27ac_NR2F_K9me3.pdf2019-09-26 13:37 2.0M 
[ ]hg38_all_SVA_CNCC_K27ac_NR2F1_K9me3.pdf2019-09-26 13:37 2.1M 
[IMG]Fig4d_SVA.svg2019-02-13 15:38 2.4M 
[ ]Two_species_INDEL_both_all_heatmap.pdf2019-01-21 13:19 3.1M 
[ ]hg38_SVA_truncation.pdf2019-11-21 10:39 3.1M 
[ ]human_insertion_descsize_K9me3.pdf2019-08-28 12:40 3.3M 
[ ]LTR5_share_peak.pdf2018-08-06 11:07 4.1M 
[ ]INDEL_inside_K4me3peaks_enrichment.pdf2018-11-14 15:30 4.7M 
[ ]K4me3_enrichment.pdf2018-11-14 14:38 4.7M 
[IMG]LTR5_share_peak.svg2018-08-03 10:12 7.5M 
[IMG]peak_enrichment_matrix_copy.tif2019-06-19 16:02 20M 
[IMG]deep_fisher.tif2019-11-20 17:25 26M 
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