Alignment Stats
| Sequence pairs analysed in total |
273899149 |
| Paired-end alignments with a unique best hit |
246594754 |
| Pairs without alignments under any condition |
13522777 |
| Pairs that did not map uniquely |
13781618 |
| Genomic sequence context not extractable (edges of chromosomes) |
1747 |
|
|
Cytosine Methylation
| Total C's analysed |
12585064357 |
| Methylated C's in CpG context |
461564975 |
| Methylated C's in CHG context |
14991646 |
| Methylated C's in CHH context |
54101515 |
| Methylated C's in Unknown context |
1526179 |
| Unmethylated C's in CpG context |
102749352 |
| Unmethylated C's in CHG context |
2640727970 |
| Unmethylated C's in CHH context |
9310928899 |
| Unmethylated C's in Unknown context |
7350659 |
| Percentage methylation (CpG context) |
81.8% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
123761310 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
122831697 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
246593007 |
| Unique alignments |
202049948 |
| Duplicates removed |
44543059 |
| Duplicated alignments were found at 36947743 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
7796338428 |
| Methylated C's in CpG context |
285259653 |
| Methylated C's in CHG context |
11140016 |
| Methylated C's in CHH context |
40614960 |
| Unmethylated C's in CpG context |
63269241 |
| Unmethylated C's in CHG context |
1631696076 |
| Unmethylated C's in CHH context |
5764358482 |
| Percentage methylation (CpG context) |
81.8% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
Nucleotide Coverage
| Nucleotide Class | Counts Sample | Counts Genome | % in Sample | % in Genome | fold coverage |
|---|
| A | 18297274627 | 866420001 | 30.09 | 29.52 | 21.118 |
|---|
| T | 18544334503 | 868918077 | 30.50 | 29.61 | 21.342 |
|---|
| C | 11658594200 | 598683433 | 19.17 | 20.40 | 19.474 |
|---|
| G | 12306384614 | 600854940 | 20.24 | 20.47 | 20.481 |
|---|
| AC | 2962442237 | 147939993 | 4.91 | 5.04 | 20.025 |
|---|
| CA | 4238206926 | 212726856 | 7.02 | 7.25 | 19.923 |
|---|
| TC | 3463302127 | 174696228 | 5.74 | 5.95 | 19.825 |
|---|
| CT | 4041043030 | 205281198 | 6.70 | 6.99 | 19.685 |
|---|
| CC | 2751766132 | 151371046 | 4.56 | 5.16 | 18.179 |
|---|
| CG | 521933507 | 29303965 | 0.86 | 1.00 | 17.811 |
|---|
| GC | 2410575652 | 124675968 | 3.99 | 4.25 | 19.335 |
|---|
| GG | 2988620819 | 152424560 | 4.95 | 5.19 | 19.607 |
|---|
| AG | 4182620244 | 205417428 | 6.93 | 7.00 | 20.362 |
|---|
| GA | 3637986939 | 175501875 | 6.03 | 5.98 | 20.729 |
|---|
| TG | 4507433483 | 213708670 | 7.47 | 7.28 | 21.091 |
|---|
| GT | 3184569790 | 148252316 | 5.28 | 5.05 | 21.481 |
|---|
| TT | 6210311894 | 289149328 | 10.29 | 9.85 | 21.478 |
|---|
| TA | 4202178364 | 191363599 | 6.96 | 6.52 | 21.959 |
|---|
| AT | 5001296040 | 226234956 | 8.29 | 7.71 | 22.107 |
|---|
| AA | 6049243731 | 286827281 | 10.02 | 9.77 | 21.090 |
|---|
|
|
M-Bias Plot
