Alignment Stats
| Sequence pairs analysed in total |
260992707 |
| Paired-end alignments with a unique best hit |
234536038 |
| Pairs without alignments under any condition |
13252001 |
| Pairs that did not map uniquely |
13204668 |
| Genomic sequence context not extractable (edges of chromosomes) |
1672 |
|
|
Cytosine Methylation
| Total C's analysed |
11744819477 |
| Methylated C's in CpG context |
422816222 |
| Methylated C's in CHG context |
14093602 |
| Methylated C's in CHH context |
51105862 |
| Methylated C's in Unknown context |
1482370 |
| Unmethylated C's in CpG context |
97598348 |
| Unmethylated C's in CHG context |
2460046771 |
| Unmethylated C's in CHH context |
8699158672 |
| Unmethylated C's in Unknown context |
6899435 |
| Percentage methylation (CpG context) |
81.2% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
117733568 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
116800798 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
234534366 |
| Unique alignments |
187277032 |
| Duplicates removed |
47257334 |
| Duplicated alignments were found at 38201417 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
7102248262 |
| Methylated C's in CpG context |
255333919 |
| Methylated C's in CHG context |
10251398 |
| Methylated C's in CHH context |
37581023 |
| Unmethylated C's in CpG context |
58645385 |
| Unmethylated C's in CHG context |
1484170058 |
| Unmethylated C's in CHH context |
5256266479 |
| Percentage methylation (CpG context) |
81.3% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
Nucleotide Coverage
| Nucleotide Class | Counts Sample | Counts Genome | % in Sample | % in Genome | fold coverage |
|---|
| A | 17783466483 | 866420001 | 30.75 | 29.52 | 20.525 |
|---|
| T | 17528096437 | 868918077 | 30.30 | 29.61 | 20.172 |
|---|
| C | 10876568999 | 598683433 | 18.80 | 20.40 | 18.167 |
|---|
| G | 11653167412 | 600854940 | 20.15 | 20.47 | 19.394 |
|---|
| AC | 2832350089 | 147939993 | 4.93 | 5.04 | 19.145 |
|---|
| CA | 4020898149 | 212726856 | 7.00 | 7.25 | 18.902 |
|---|
| TC | 3216947997 | 174696228 | 5.60 | 5.95 | 18.415 |
|---|
| CT | 3756917957 | 205281198 | 6.54 | 6.99 | 18.301 |
|---|
| CC | 2519179360 | 151371046 | 4.39 | 5.16 | 16.642 |
|---|
| CG | 480643339 | 29303965 | 0.84 | 1.00 | 16.402 |
|---|
| GC | 2242698515 | 124675968 | 3.91 | 4.25 | 17.988 |
|---|
| GG | 2816797391 | 152424560 | 4.91 | 5.19 | 18.480 |
|---|
| AG | 4018432270 | 205417428 | 7.00 | 7.00 | 19.562 |
|---|
| GA | 3515949850 | 175501875 | 6.12 | 5.98 | 20.034 |
|---|
| TG | 4237126669 | 213708670 | 7.38 | 7.28 | 19.827 |
|---|
| GT | 2997253743 | 148252316 | 5.22 | 5.05 | 20.217 |
|---|
| TT | 5846445704 | 289149328 | 10.18 | 9.85 | 20.219 |
|---|
| TA | 4075592634 | 191363599 | 7.10 | 6.52 | 21.298 |
|---|
| AT | 4826509503 | 226234956 | 8.41 | 7.71 | 21.334 |
|---|
| AA | 6006976203 | 286827281 | 10.46 | 9.77 | 20.943 |
|---|
|
|
M-Bias Plot
