Standard error
[Tue Aug 16 04:12:23 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/vcf/vcfFormatTest.bcf OUTPUT=/tmp/likeTest7275841497775591324.bcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:23 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:23 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1732247552
[Tue Aug 16 04:12:23 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/vcf/vcfFormatTest.bcf OUTPUT=/tmp/backAndForth97805833310067896.vcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:23 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1732247552
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/tmp/backAndForth97805833310067896.vcf OUTPUT=/tmp/backAndForth3258152419754620301.bcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:24 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1732247552
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/vcf/vcfFormatTest.vcf OUTPUT=/tmp/backAndForth8127934337866801999.bcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:24 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1707606016
[Tue Aug 16 04:12:24 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/tmp/backAndForth8127934337866801999.bcf OUTPUT=/tmp/backAndForth7676641873982286493.vcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:24 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1707606016
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/vcf/vcfFormatTest.vcf OUTPUT=/tmp/likeTest5236891571681035878.vcf REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:25 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1707606016
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/vcf/vcfFormatTest.vcf OUTPUT=/tmp/backAndForth7370850401458188118.vcf.gz CREATE_INDEX=false REQUIRE_INDEX=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:25 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1707606016
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter INPUT=/tmp/backAndForth7370850401458188118.vcf.gz OUTPUT=/tmp/backAndForth4252527226600013615.vcf REQUIRE_INDEX=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=true CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:12:25 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:12:25 CDT 2016] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1680343040