| Test |
Duration |
Result |
| testAdapterInAllReadPositions[0](100) |
0.066s |
passed |
| testAdapterInAllReadPositions[1](36) |
0.006s |
passed |
| testAdapterListTruncation[0](PAIRED_END) |
0.002s |
passed |
| testAdapterListTruncation[1](INDEXED) |
0.002s |
passed |
| testAdapterListTruncation[2](SINGLE_END) |
0.002s |
passed |
| testAdapterListTruncation[3](NEXTERA_V1) |
0.002s |
passed |
| testAdapterListTruncation[4](NEXTERA_V2) |
0.003s |
passed |
| testAdapterListTruncation[5](DUAL_INDEXED) |
0.002s |
passed |
| testAdapterListTruncation[6](FLUIDIGM) |
0.003s |
passed |
| testAdapterListTruncation[7](TRUSEQ_SMALLRNA) |
0.003s |
passed |
| testAdapterListTruncation[8](ALTERNATIVE_SINGLE_END) |
0.003s |
passed |
| testAdapterTruncation |
0.001s |
passed |
| testBasicClip[0](Simple test 1, AAAAACCCCCAGATCGGAAGAGCA, AGATCGGAAGAGCG, 14, 0.15, 10) |
0s |
passed |
| testBasicClip[10](From PE Test Data1, CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGGT, AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG, 17, 0.14, 19) |
0s |
passed |
| testBasicClip[11](From PE Test Data2, CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGGT, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 5, 0.14, -1) |
0.001s |
passed |
| testBasicClip[12](From Test 8-clipped, TGGGGTGGTTATTGTTGATTTTTGTTTGTGTGTTAGGTTGTTTGTGTTAGTTTTTTATTTTATTTTCGAGATCGAA, AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG, 8, 0.14, 68) |
0s |
passed |
| testBasicClip[13](50% can be bad, AAAAACCCCCAGGTCGGAAGAGCG, AGATCGGAAGAGCG, 5, 0.5, 18) |
0s |
passed |
| testBasicClip[14](From 30E54AAXX.5.a, ATATCTGAAGATCTCGTATGCCGTCTTCTGCTTG, AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG, 34, 0.14, 0) |
0s |
passed |
| testBasicClip[15](From 30E54AAXX.5.b, ATATCTGAAGATCTCGTATGCCGTCTTCTGCTTG, AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG, 34, 0.14, 0) |
0.001s |
passed |
| testBasicClip[1](Simple test 2, AAAAACCCCCGGGGGAGATCGGAAGAGCA, AGATCGGAAGAGCG, 14, 0.15, 15) |
0s |
passed |
| testBasicClip[2](No adapter, AAAAACCCCCGGGGGTTTTT, AGATCGGAAGAGCG, 6, 0.15, -1) |
0s |
passed |
| testBasicClip[3](Partial adapter, AAAAACCCCCTGATCGGAA, AGATCGGAAGAGCG, 9, 0.15, 10) |
0s |
passed |
| testBasicClip[4](No sequence, null, AGATCGGAAGAGCG, 6, 0.15, -1) |
0.001s |
passed |
| testBasicClip[5](Read too short, AGATCGGAAG, AGATCGGAAGAGCG, 11, 0.15, -1) |
0s |
passed |
| testBasicClip[6](All No Calls, AAACCCNNNNNNNNNNNNNNNNNNNN, AGATCGGAAGAGCG, 6, 0.15, -1) |
0s |
passed |
| testBasicClip[7](From Test Data1, CGGCATTCCTGCTGAACCGAGATCGGAAGAGCGTCGTGTAGGGAAAGGGGGTGGATCTCGGTGGGCGGCGTGTTGT, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 57, 0.15, 19) |
0s |
passed |
| testBasicClip[8](From Test Data2a, CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCCGAA, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 9, 0.14, 27) |
0s |
passed |
| testBasicClip[9](From Test Data2b, CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAA, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 10, 0.14, -1) |
0s |
passed |
| testOneSidedMatchSupersededByTwoSidedMatch |
0s |
passed |
| testPairedEndClip[0](Basic positive paired test matching, CTACTGGCGCTGAAACTGAGCAGCCAAGCAGATCGG, GCTTGGCTGCTCAGTTTCAGCGCCAGTAGAGATCGG, INDEXED) |
0.001s |
passed |
| testPairedEndClip[1](Basic positive first end one-sided test matching, CTACTGGCGCTGAAAAGATCGGAAGAGCGGTTCAGC, AAAAAATTTTTTCCCCCCGGGGGGAAAAAATTTTTT, PAIRED_END) |
0s |
passed |
| testPairedEndClip[2](Basic positive second end one-sided test matching, AAAAAATTTTTTCCCCCCGGGGGGAAAAAATTTTTT, AAAAAATTTTTTCCCAGATCGGAAGAGCGTCGTGTA, PAIRED_END) |
0s |
passed |
| testPairedEndClip[3](Basic negative one-sided test matching, GGCGCTGAAACTACTGGCGCTGAAAAGATCGGAAGA, AAAAAATTTTTTCCCCCCGGGGGGAAAAAATTTTTT, null) |
0s |
passed |
| testPairedEndClip[4](Mis-match paired test matching, CTACTGGCGCTGAAACTGAGCAGCCAAGCAGATCGG, AGCTTGGCTGCTCAGTTTCAGCGCCAGTAGAGATCG, null) |
0s |
passed |
| testSingleEndSamRecordClip[0](Simple test 1, AAAAACCCCCAGATCGGAAGAGCA, AGATCGGAAGAGCG, 14, 0.15, 10) |
0.001s |
passed |
| testSingleEndSamRecordClip[10](From PE Test Data1, CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGGT, AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG, 17, 0.14, 19) |
0s |
passed |
| testSingleEndSamRecordClip[11](From PE Test Data2, CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGGT, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 5, 0.14, -1) |
0s |
passed |
| testSingleEndSamRecordClip[12](From Test 8-clipped, TGGGGTGGTTATTGTTGATTTTTGTTTGTGTGTTAGGTTGTTTGTGTTAGTTTTTTATTTTATTTTCGAGATCGAA, AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG, 8, 0.14, 68) |
0s |
passed |
| testSingleEndSamRecordClip[13](50% can be bad, AAAAACCCCCAGGTCGGAAGAGCG, AGATCGGAAGAGCG, 5, 0.5, 18) |
0s |
passed |
| testSingleEndSamRecordClip[14](From 30E54AAXX.5.a, ATATCTGAAGATCTCGTATGCCGTCTTCTGCTTG, AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG, 34, 0.14, 0) |
0s |
passed |
| testSingleEndSamRecordClip[15](From 30E54AAXX.5.b, ATATCTGAAGATCTCGTATGCCGTCTTCTGCTTG, AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG, 34, 0.14, 0) |
0.001s |
passed |
| testSingleEndSamRecordClip[1](Simple test 2, AAAAACCCCCGGGGGAGATCGGAAGAGCA, AGATCGGAAGAGCG, 14, 0.15, 15) |
0s |
passed |
| testSingleEndSamRecordClip[2](No adapter, AAAAACCCCCGGGGGTTTTT, AGATCGGAAGAGCG, 6, 0.15, -1) |
0s |
passed |
| testSingleEndSamRecordClip[3](Partial adapter, AAAAACCCCCTGATCGGAA, AGATCGGAAGAGCG, 9, 0.15, 10) |
0.001s |
passed |
| testSingleEndSamRecordClip[4](No sequence, null, AGATCGGAAGAGCG, 6, 0.15, -1) |
0s |
passed |
| testSingleEndSamRecordClip[5](Read too short, AGATCGGAAG, AGATCGGAAGAGCG, 11, 0.15, -1) |
0s |
passed |
| testSingleEndSamRecordClip[6](All No Calls, AAACCCNNNNNNNNNNNNNNNNNNNN, AGATCGGAAGAGCG, 6, 0.15, -1) |
0s |
passed |
| testSingleEndSamRecordClip[7](From Test Data1, CGGCATTCCTGCTGAACCGAGATCGGAAGAGCGTCGTGTAGGGAAAGGGGGTGGATCTCGGTGGGCGGCGTGTTGT, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 57, 0.15, 19) |
0.002s |
passed |
| testSingleEndSamRecordClip[8](From Test Data2a, CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCCGAA, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 9, 0.14, 27) |
0.001s |
passed |
| testSingleEndSamRecordClip[9](From Test Data2b, CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAA, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT, 10, 0.14, -1) |
0s |
passed |