Standard error
[Tue Aug 16 04:11:59 CDT 2016] picard.sam.MergeSamFiles INPUT=[/bar/jli/Chip-seq/script/picard/testdata/picard/sam/MergeSamFiles/unsorted_input/1.sam, /bar/jli/Chip-seq/script/picard/testdata/picard/sam/MergeSamFiles/unsorted_input/2.sam] OUTPUT=/tmp/unsortedInputSortedOutputTest.5302389501987241992.bam SORT_ORDER=coordinate ASSUME_SORTED=false MERGE_SEQUENCE_DICTIONARIES=false USE_THREADING=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:59 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:59 MergeSamFiles Sorting input files using temp directory [/tmp/jli]
INFO 2016-08-16 04:11:59 MergeSamFiles Finished reading inputs.
[Tue Aug 16 04:11:59 CDT 2016] picard.sam.MergeSamFiles done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1760559104
[Tue Aug 16 04:11:59 CDT 2016] picard.sam.ValidateSamFile INPUT=/tmp/unsortedInputSortedOutputTest.5302389501987241992.bam MODE=VERBOSE MAX_OUTPUT=100 IGNORE_WARNINGS=false VALIDATE_INDEX=true INDEX_VALIDATION_STRINGENCY=EXHAUSTIVE IS_BISULFITE_SEQUENCED=false MAX_OPEN_TEMP_FILES=8000 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:59 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:11:59 CDT 2016] picard.sam.ValidateSamFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1760559104