Class picard.sam.AddCommentsToBamTest

3

tests

0

failures

0

ignored

0.121s

duration

100%

successful

Tests

Test Duration Result
testAddCommentsToBam 0.085s passed
testUsingNewlines 0.018s passed
testUsingSam 0.018s passed

Standard error

[Tue Aug 16 04:11:05 CDT 2016] picard.sam.AddCommentsToBam INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/aligned_queryname_sorted.bam OUTPUT=/tmp/addCommentsToBamTest.2200617637715814267.bam COMMENT=[test1, test2, test3]    VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:05 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:11:05 CDT 2016] picard.sam.AddCommentsToBam done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1799356416
[Tue Aug 16 04:11:06 CDT 2016] picard.sam.AddCommentsToBam INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/summary_alignment_stats_test2.sam OUTPUT=/tmp/addCommentsToBamTest.samFile2399871442757331158.bam COMMENT=[test1, test2, test3]    VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:06 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:11:06 CDT 2016] picard.sam.AddCommentsToBam done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1799356416
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp