Class picard.illumina.parser.BclParserTest

all > picard.illumina.parser > BclParserTest
71

tests
0

failures
0

ignored
3.364s

duration
100%

successful

Tests

Test Duration Result
eamssParsingTestNoGSeries[0](BasesAndQuals( G G G G G G G G G , 13,7,35,32,31,33,31,26,29,, 13,7,35,32,31,33,31,26,29,)) 0.001s passed
eamssParsingTestNoGSeries[10](BasesAndQuals( T A C , 2,11,13,, 2,2,2,)) 0s passed
eamssParsingTestNoGSeries[11](BasesAndQuals( T A C G G . . T C C C C T T T G G G A T G C A T A C G G . . T C C C C T T T G G G A T G C A , 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,2,19,16,2,2,, 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[1](BasesAndQuals( G G G G G G G G G , 13,7,35,26,18,19,35,8,33,, 13,7,35,26,18,19,35,8,33,)) 0s passed
eamssParsingTestNoGSeries[2](BasesAndQuals( A C C C C C C C C C C C T G G C T A A , 7,8,33,7,2,33,16,17,19,7,6,5,35,2,33,22,18,16,25,, 7,8,33,7,2,33,16,17,19,7,6,5,35,2,33,22,18,16,25,)) 0s passed
eamssParsingTestNoGSeries[3](BasesAndQuals( T G G G G G G G . . G G G G G G G T A A G G G , 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,22,18,16,25,33,32,16,18,, 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,22,18,16,25,33,32,16,18,)) 0s passed
eamssParsingTestNoGSeries[4](BasesAndQuals( T A C , 25,16,16,, 25,16,16,)) 0s passed
eamssParsingTestNoGSeries[5](BasesAndQuals( T A C G G . . T C C C C T T T G G G A T G C A T A C G G . . T C C C C T T T G G G A T G C A , 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,17,19,16,16,16,, 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,17,19,16,16,16,)) 0.001s passed
eamssParsingTestNoGSeries[6](BasesAndQuals( G G G G G G G G G , 13,7,35,32,2,16,33,14,19,, 13,7,35,32,2,16,33,2,2,)) 0s passed
eamssParsingTestNoGSeries[7](BasesAndQuals( G G G G G G G G G , 13,7,35,33,18,2,6,8,33,, 13,7,35,33,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[8](BasesAndQuals( A C C C C C C C C C C C T G G C T A A , 7,8,33,7,2,33,16,17,19,32,33,5,8,2,2,2,33,16,25,, 7,8,33,7,2,33,16,17,19,32,33,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[9](BasesAndQuals( T G G G G G G G . . G G G G G G G T A A G G G , 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,30,13,16,7,2,2,16,18,, 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,30,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[0](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,33,7,12,33,16,17,2,2,32,35,35,35,2,15,9,, 7,8,33,7,12,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[1](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,2,7,2,2,16,17,2,2,32,35,35,35,2,15,9,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[2](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,2,7,2,2,16,17,2,2,32,35,35,35,33,15,9,, 7,8,2,7,2,2,16,17,2,2,32,35,35,35,33,2,2,)) 0s passed
eamssParsingTestWithGSeries[3](BasesAndQuals( A C C G C C G G G G G G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,9,9,19,, 33,31,29,32,28,27,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[4](BasesAndQuals( A C C G C C G G G G G G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,33,32,34,, 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,33,32,34,)) 0.001s passed
eamssParsingTestWithGSeries[5](BasesAndQuals( A C C G C C G G G G A G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,9,9,19,, 33,31,29,32,28,27,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[6](BasesAndQuals( A C G G G C G G G G G G G G G G T T A , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,18,3,9,19,, 33,31,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[7](BasesAndQuals( A C G G C C G G G G G G G G G G G G G , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,, 33,31,29,32,28,16,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[8](BasesAndQuals( A C G G C C G G G G G G G G G G G G G T A C T T G G G G G G G G G G G G G , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,33,34,2,4,8,33,7,35,15,16,31,30,38,16,15,22,29,25,, 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,33,34,2,4,8,33,7,35,15,16,31,30,38,16,15,22,29,25,)) 0s passed
fullBclParserTestWBadDeletedSkips[0]([I@279042da, 180, -1, -1, -1) 0.058s passed
fullBclParserTestWBadDeletedSkips[1]([I@1381dc48, 180, -1, -1, -1) 0.053s passed
fullBclParserTestWBadDeletedSkips[2]([I@7a3a357a, 120, -1, -1, -1) 0.057s passed
fullBclParserTestWBadDeletedSkips[3]([I@4bd96b21, 120, -1, -1, -1) 0.069s passed
fullBclParserTestWBadDeletedSkips[4]([I@763a6006, 60, -1, -1, -1) 0.068s passed
fullBclParserTestWBadDeletedSkips[5]([I@1c86ce24, 206, 25, 0, 0) 0.072s passed
fullBclParserTestWBadDeletedSkips[6]([I@643d8128, 206, 25, 0, 0) 0.067s passed
fullBclParserTestWBadDeletedSkips[7]([I@63bcf231, 80, 19, 0, 1) 0.068s passed
fullBclParserTestWBadDeletedSkips[8]([I@3dee866c, 156, 35, 0, 0) 0.064s passed
fullBclParserTestWBadDeletedSkips[9]([I@7ff674fc, 66, 5, 0, 0) 0.046s passed
fullBclParserTestWDeletedSkips[0]([I@103f2d0f, 180, -1, -1, -1) 0.048s passed
fullBclParserTestWDeletedSkips[1]([I@5e990d20, 180, -1, -1, -1) 0.048s passed
fullBclParserTestWDeletedSkips[2]([I@36e054ef, 120, -1, -1, -1) 0.047s passed
fullBclParserTestWDeletedSkips[3]([I@14e6f15c, 120, -1, -1, -1) 0.337s passed
fullBclParserTestWDeletedSkips[4]([I@d0c96cf, 60, -1, -1, -1) 0.199s passed
fullBclParserTestWDeletedSkips[5]([I@2c200e7b, 206, 25, 0, 0) 0.055s passed
fullBclParserTestWDeletedSkips[6]([I@31b8ec6, 206, 25, 0, 0) 0.057s passed
fullBclParserTestWDeletedSkips[7]([I@5be9568b, 80, 19, 0, 1) 0.055s passed
fullBclParserTestWDeletedSkips[8]([I@2802d2e1, 156, 35, 0, 0) 0.080s passed
fullBclParserTestWDeletedSkips[9]([I@78f79cfa, 66, 5, 0, 0) 0.080s passed
fullBclParserTestWPartiallyDeletedSkips[0]([I@31e0713e, 180, -1, -1, -1) 0.079s passed
fullBclParserTestWPartiallyDeletedSkips[1]([I@422a10a1, 180, -1, -1, -1) 0.084s passed
fullBclParserTestWPartiallyDeletedSkips[2]([I@261399e1, 120, -1, -1, -1) 0.082s passed
fullBclParserTestWPartiallyDeletedSkips[3]([I@40c22401, 120, -1, -1, -1) 0.097s passed
fullBclParserTestWPartiallyDeletedSkips[4]([I@2da5fe8d, 60, -1, -1, -1) 0.083s passed
fullBclParserTestWPartiallyDeletedSkips[5]([I@528834a5, 206, 25, 0, 0) 0.083s passed
fullBclParserTestWPartiallyDeletedSkips[6]([I@5a1a20ea, 206, 25, 0, 0) 0.083s passed
fullBclParserTestWPartiallyDeletedSkips[7]([I@15146438, 80, 19, 0, 1) 0.078s passed
fullBclParserTestWPartiallyDeletedSkips[8]([I@93b8981, 156, 35, 0, 0) 0.082s passed
fullBclParserTestWPartiallyDeletedSkips[9]([I@6b6ce736, 66, 5, 0, 0) 0.080s passed
fullBclParserTestWSkips[0]([I@53ac07d0, 180, -1, -1, -1) 0.033s passed
fullBclParserTestWSkips[1]([I@7954c327, 180, -1, -1, -1) 0.033s passed
fullBclParserTestWSkips[2]([I@3b822726, 120, -1, -1, -1) 0.030s passed
fullBclParserTestWSkips[3]([I@7ff99797, 120, -1, -1, -1) 0.032s passed
fullBclParserTestWSkips[4]([I@44419aed, 60, -1, -1, -1) 0.028s passed
fullBclParserTestWSkips[5]([I@e8f2bb1, 206, 25, 0, 0) 0.036s passed
fullBclParserTestWSkips[6]([I@29b6515f, 206, 25, 0, 0) 0.035s passed
fullBclParserTestWSkips[7]([I@29a884fa, 80, 19, 0, 1) 0.030s passed
fullBclParserTestWSkips[8]([I@128ce720, 156, 35, 0, 0) 0.034s passed
fullBclParserTestWSkips[9]([I@4ea370a8, 66, 5, 0, 0) 0.030s passed
fullBclParserTest[0]([I@354906b5, 180, -1, -1, -1) 0.171s passed
fullBclParserTest[1]([I@fd55d81, 180, -1, -1, -1) 0.060s passed
fullBclParserTest[2]([I@2fbb45c8, 120, -1, -1, -1) 0.039s passed
fullBclParserTest[3]([I@2e60f09d, 120, -1, -1, -1) 0.039s passed
fullBclParserTest[4]([I@1a77bea7, 60, -1, -1, -1) 0.032s passed
fullBclParserTest[5]([I@5cc067c6, 206, 25, 0, 0) 0.052s passed
fullBclParserTest[6]([I@2d3891c7, 206, 25, 0, 0) 0.059s passed
fullBclParserTest[7]([I@6ba29c96, 80, 19, 0, 1) 0.040s passed
fullBclParserTest[8]([I@64239b2a, 156, 35, 0, 0) 0.044s passed
fullBclParserTest[9]([I@36a860aa, 66, 5, 0, 0) 0.045s passed