[Tue Aug 16 04:11:37 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=25T8B25T BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.6712467699511036871.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:37 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:37 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:37 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:37 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:37 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:37 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:37 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib_dual2945026484693872035.tmp LANE=1 READ_STRUCTURE=25T8B8B25T BARCODE=[CAATAGTCCGACTCTC] METRICS_FILE=/tmp/dual.7703104734572160049.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 1 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=25T8B25T BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.8844530127278835528.metrics COMPRESS_OUTPUTS=true MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
ERROR 2016-08-16 04:11:38 ExtractIlluminaBarcodes Error processing tile 1101
htsjdk.samtools.SAMException: Error opening file for writing: s_1_1101_barcode.txt.gz
at htsjdk.samtools.util.IOUtil.openGzipFileForWriting(IOUtil.java:638)
at htsjdk.samtools.util.IOUtil.openFileForWriting(IOUtil.java:576)
at htsjdk.samtools.util.IOUtil.openFileForBufferedWriting(IOUtil.java:591)
at htsjdk.samtools.util.IOUtil.openFileForBufferedWriting(IOUtil.java:598)
at picard.illumina.ExtractIlluminaBarcodes$PerTileBarcodeExtractor.run(ExtractIlluminaBarcodes.java:624)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.FileNotFoundException: /tmp/eib.589156035500226356.tmp/s_1_1101_barcode.txt.gz (Permission denied)
at java.io.FileOutputStream.open0(Native Method)
at java.io.FileOutputStream.open(FileOutputStream.java:270)
at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
at htsjdk.samtools.util.IOUtil.openGzipFileForWriting(IOUtil.java:630)
... 9 more
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
ERROR 2016-08-16 04:11:38 ExtractIlluminaBarcodes Abandoning metrics calculation because one or more PerTileBarcodeExtractors failed.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=4M21T8B21T4M BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.160036801974862588.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=25T8B25T BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.3104786112107894459.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=25T25T8B BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.4040367317233700370.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib_qual2116770993914414363.tmp LANE=1 READ_STRUCTURE=25T8B25T BARCODE=[CAATAGTC] METRICS_FILE=/tmp/qual.7869588331801822656.metrics MAX_MISMATCHES=0 MINIMUM_BASE_QUALITY=16 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 1 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib_qual2116770993914414363.tmp LANE=1 READ_STRUCTURE=25T8B25T BARCODE=[CAATAGTC] METRICS_FILE=/tmp/qual.8395968685866152498.metrics MAX_MISMATCHES=0 MINIMUM_BASE_QUALITY=25 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 1 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=25T8B BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.3274065331690627932.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=4M21T8B BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.7334810746704494727.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=8B25T BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.5255979202203075328.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes BASECALLS_DIR=/tmp/eib.589156035500226356.tmp LANE=1 READ_STRUCTURE=8B4M21T BARCODE=[CAACTCTC, CAACTCTG, ACAGGTAT, GACCGTTG, ATTATCAA, TGCTGCTG, AACAATGG, TGTAATCA, GCCGTCGA, GTCCACAG, TTGTCTAT, GTGGAGAC, TTGCAAAT] METRICS_FILE=/tmp/eib.5686568566375356452.metrics MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 MINIMUM_BASE_QUALITY=0 MINIMUM_QUALITY=2 COMPRESS_OUTPUTS=false NUM_PROCESSORS=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3098916 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:38 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processing with 1 PerTileBarcodeExtractor(s).
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1201
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 2101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Extracting barcodes for tile 1101
INFO 2016-08-16 04:11:38 ExtractIlluminaBarcodes Processed 3 tiles.
[Tue Aug 16 04:11:38 CDT 2016] picard.illumina.ExtractIlluminaBarcodes done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1823997952