Class picard.analysis.CollectWgsMetricsFromQuerySortedTest
Tests
| Test |
Duration |
Result |
| testMetricsFromClippedOverhangs |
0.045s |
passed |
| testPassingInGenomeTerritory |
0.034s |
passed |
Standard error
[Tue Aug 16 04:11:28 CDT 2016] picard.analysis.CollectWgsMetricsFromQuerySorted INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/namesorted.test.sam OUTPUT=/tmp/metrics7972883888894265873.txt MINIMUM_USABLE_MAPPING_QUALITY=20 MINIMUM_USABLE_BASE_QUALITY=20 MINIMUM_RAW_MAPPING_QUALITY=0 MINIMUM_RAW_BASE_QUALITY=3 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:28 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:11:28 CDT 2016] picard.analysis.CollectWgsMetricsFromQuerySorted done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1830289408
[Tue Aug 16 04:11:28 CDT 2016] picard.analysis.CollectWgsMetricsFromQuerySorted INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/namesorted.test.sam OUTPUT=/tmp/metrics146621327735718223.txt GENOME_TERRITORY=1000 MINIMUM_USABLE_MAPPING_QUALITY=20 MINIMUM_USABLE_BASE_QUALITY=20 MINIMUM_RAW_MAPPING_QUALITY=0 MINIMUM_RAW_BASE_QUALITY=3 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:28 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
[Tue Aug 16 04:11:28 CDT 2016] picard.analysis.CollectWgsMetricsFromQuerySorted done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1830289408