Class picard.analysis.CollectRnaSeqMetricsTest

[Tue Aug 16 04:11:25 CDT 2016] picard.analysis.CollectRnaSeqMetrics REF_FLAT=/tmp/tmp.211225377410702681.refFlat RIBOSOMAL_INTERVALS=/tmp/tmp.rRna.2752210691010528169.interval_list STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND IGNORE_SEQUENCE=[chrM] INPUT=/tmp/tmp.collectRnaSeqMetrics.9213466039747450993.sam OUTPUT=/tmp/tmp.9220564946836599384.rna_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:25 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO	2016-08-16 04:11:25	CollectRnaSeqMetrics	Loaded 1 genes.
[Tue Aug 16 04:11:25 CDT 2016] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1829765120
[Tue Aug 16 04:11:25 CDT 2016] picard.analysis.CollectRnaSeqMetrics REF_FLAT=/tmp/tmp.5663110323574795128.refFlat RIBOSOMAL_INTERVALS=/tmp/tmp.rRna.7068793203333208550.interval_list STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND IGNORE_SEQUENCE=[chrM] METRIC_ACCUMULATION_LEVEL=[SAMPLE, LIBRARY] INPUT=/tmp/tmp.collectRnaSeqMetrics.7698071860640004043.sam OUTPUT=/tmp/tmp.6586456432637034414.rna_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:25 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO	2016-08-16 04:11:25	CollectRnaSeqMetrics	Loaded 1 genes.
[Tue Aug 16 04:11:25 CDT 2016] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1829765120