Class picard.analysis.CollectInsertSizeMetricsTest

all > picard.analysis > CollectInsertSizeMetricsTest
3

tests
0

failures
0

ignored
0.798s

duration
100%

successful

Tests

Test Duration Result
test 0.282s passed
testHistogramWidthIsSetProperly 0.292s passed
testMultipleOrientationsForHistogram 0.224s passed

Standard error

[Tue Aug 16 04:11:23 CDT 2016] picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/tmp/test8047273004632369379.pdf INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/insert_size_metrics_test.sam OUTPUT=/tmp/test6348295611340152033.insert_size_metrics    DEVIATIONS=10.0 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INCLUDE_DUPLICATES=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:23 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO	2016-08-16 04:11:23	RExecutor	Executing R script via command: Rscript /tmp/script8982312040380207590.R /tmp/test6348295611340152033.insert_size_metrics /tmp/test8047273004632369379.pdf insert_size_metrics_test.sam
INFO	2016-08-16 04:11:24	ProcessExecutor	null device 
INFO	2016-08-16 04:11:24	ProcessExecutor	          1 
[Tue Aug 16 04:11:24 CDT 2016] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1829765120
[Tue Aug 16 04:11:24 CDT 2016] picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/tmp/test6942966541828394163.pdf METRIC_ACCUMULATION_LEVEL=[READ_GROUP] INPUT=/bar/jli/Chip-seq/script/picard/testdata/picard/sam/insert_size_metrics_test.sam OUTPUT=/tmp/test6398066346559273709.insert_size_metrics    DEVIATIONS=10.0 MINIMUM_PCT=0.05 INCLUDE_DUPLICATES=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=1000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Aug 16 04:11:24 CDT 2016] Executing as jli@corona on Linux 3.19.0-61-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_91-b14; Picard version: null
INFO	2016-08-16 04:11:24	RExecutor	Executing R script via command: Rscript /tmp/script7690922512130742357.R /tmp/test6398066346559273709.insert_size_metrics /tmp/test6942966541828394163.pdf insert_size_metrics_test.sam
INFO	2016-08-16 04:11:24	ProcessExecutor	null device 
INFO	2016-08-16 04:11:24	ProcessExecutor	          1 
[Tue Aug 16 04:11:24 CDT 2016] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1829765120
INFO	2016-08-16 04:11:24	RExecutor	Executing R script via command: Rscript /tmp/script6658193989462971876.R /bar/jli/Chip-seq/script/picard/testdata/picard/analysis/directed/CollectInsertSizeMetrics/multiple_orientation.sam.insert_size_metrics /tmp/test992747597735560510.pdf Flags of Chad and Romania
INFO	2016-08-16 04:11:24	ProcessExecutor	null device 
INFO	2016-08-16 04:11:24	ProcessExecutor	          1