ó
Nä²Wc        	   @@  sÞ  d  d l  m Z d Z y d  d l m Z Wn e k
 rC e Z n Xd e f d „  ƒ  YZ d „  Z	 e
 Z e ƒ  Z d „  Z d „  Z d	 „  Z d
 „  Z d e f d „  ƒ  YZ d e f d „  ƒ  YZ e ƒ  Z Z Z d „  Z Z Z Z Z Z Z Z Z Z Z  Z! Z" Z# Z$ e ƒ  Z% d „  e _& e% _' e% _( e Z) Z* Z+ Z, Z- dJ a/ d „  Z0 d „  Z1 d „  Z2 d „  Z3 d „  Z4 d „  Z5 d „  Z6 d „  Z7 dJ e d „ Z8 d e f d „  ƒ  YZ9 e9 ƒ  Z: e9 ƒ  Z; [9 d e< f d „  ƒ  YZ= e= d e f i  ƒ Z> d e> f d  „  ƒ  YZ? d! e? f d" „  ƒ  YZ@ d# e@ f d$ „  ƒ  YZA d% e? f d& „  ƒ  YZB d' e? f d( „  ƒ  YZC d) „  ZD d* „  ZE d+ „  ZF d, „  ZG d- e? f d. „  ƒ  YZH d/ e? f d0 „  ƒ  YZI d1 „  ZJ d2 „  ZK eH eL d3 ƒ ZM y eH eN d4 ƒ ZO Wn  eP k
 reH eL d4 ƒ ZO n XeH eQ d5 ƒ ZR eH eS d6 ƒ ZT d7 d8 d9 d3 d: d4 d; d< d= g	 ZU d> d? d5 g ZV d@ dA dB dC g ZW dD dE g ZX i dF d; 6dG d> 6dH d@ 6d6 dA 6dI dB 6jY ZZ e[ ƒ  Z\ y d  dJ l Z] Wn e k
 råd  dJ l] Z] n XeH e^ e] dK e ƒ dK ƒ e\ dK <[] x… eU D]} Z_ eZ e_ e_ ƒ Z` eH eM e` ƒ e\ e_ <e_ dW k re_ ja d= ƒ reH eM dL e` ƒ e\ dM e_ <eH eM dN e` ƒ e\ dO e_ <qqWx* eV D]" Z_ eH eR eZ e_ e_ ƒ ƒ e\ e_ <q—Wx* eW D]" Z_ eH eT eZ e_ e_ ƒ ƒ e\ e_ <qÄWeH eb dD ƒ Zc eH eL dE ƒ Zd x\ eU eV eW eX D]H Ze x? ef dP dQ ƒ D]. Zg e[ ƒ  ee jh eg ƒ e\ dR dS eg ee f <q1WqWeH dJ dE ƒ Zd ei d  ƒ Zj eI ƒ  Zk Zl Zm eM eO eR eT g Zn dT e f dU „  ƒ  YZo d  dJ lp Zp eo ƒ  ep jq dV <[p dJ S(X   i    (   t   absolute_imports   0.25a0(   t
   basestringt
   _ArrayTypec           B@  s5   e  Z e Z d  g Z e e e d d „ Z d „  Z RS(   t   dtypec         C@  sF   | |  _  | |  _ | |  _ | |  _ | p3 | p3 | |  _ | |  _ d  S(   N(   R   t   ndimt   is_c_contigt   is_f_contigt   inner_contigt   broadcasting(   t   selfR   R   R   R   R   R   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __init__   s    				c         C@  sV   d g |  j  } |  j r& d | d <n |  j r< d | d <n  d |  j d j | ƒ f S(   Nt   :s   ::1iÿÿÿÿi    s   %s[%s]s   , (   R   R   R   R   t   join(   R	   t   axes(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __repr__   s    		N(	   t   __name__t
   __module__t   Truet   is_arrayt   subtypest   Falset   NoneR
   R   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR      s
   	c         @  sF  d t  f d „  ƒ  Y‰  ‡  f d †  } t | t ƒ rè d	 } xv t | ƒ D]h \ } } | | ƒ | j r— | sˆ | d t | ƒ d f k r— ˆ  d ƒ ‚ n  | j d k rG | } qG qG Wt |  t | ƒ d | t | ƒ d k d | d k ƒSt | t ƒ r| | ƒ t |  d d t	 | j ƒ ƒSt
 | ƒ | k s5t ‚ t |  | ƒ d	 S(
   s¦   
    Support array type creation by slicing, e.g. double[:, :] specifies
    a 2D strided array of doubles. The syntax is the same as for
    Cython memoryviews.
    t   InvalidTypeSpecificationc           B@  s   e  Z RS(    (   R   R   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR   ,   s   c         @  s4   |  j  s! |  j s! |  j d k r0 ˆ  d ƒ ‚ n  d  S(   Ni   sD   Only a step of 1 may be provided to indicate C or Fortran contiguity(   Ni   (   t   startt   stopt   stepR   (   t   s(   R   (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   verify_slice/   s    !i    i   sH   Step may only be provided once, and only in the first or last dimension.R   R   N(   t	   Exceptiont
   isinstancet   tupleR   t	   enumerateR   t   lenR   t   slicet   boolt   intt   AssertionErrort   array(   t	   base_typet   itemR   t   step_idxt   idxR   (    (   R   s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt
   index_type&   s&    
+
c         C@  s   |  S(   N(    (   t   x(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   _empty_decoratorU   s    c          K@  s   t  S(   N(   R,   (   t	   arg_types(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   localsX   s    c          G@  s   t  S(   N(   R,   (   t   paths(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   test_assert_path_exists[   s    c          G@  s   t  S(   N(   R,   (   R/   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   test_fail_if_path_exists^   s    t   _EmptyDecoratorAndManagerc           B@  s#   e  Z d  „  Z d „  Z d „  Z RS(   c         C@  s   | S(   N(    (   R	   R+   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __call__b   s    c         C@  s   d  S(   N(    (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt	   __enter__d   s    c         C@  s   d  S(   N(    (   R	   t   exc_typet	   exc_valuet	   traceback(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __exit__f   s    (   R   R   R3   R4   R8   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR2   a   s   		t   _Optimizationc           B@  s   e  Z RS(    (   R   R   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR9   i   s   c         C@  s   t  ƒ  S(   N(   R2   (   t   arg(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   <lambda>r   s    c         C@  s   t  ƒ  S(   N(   R2   (   R:   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR;   w   s    c         O@  st   t  |  t ƒ r> t d  k r. d d l m a n  t |  | | Ž St | ƒ t | ƒ k oa d k n sl t ‚ |  Sd  S(   Ni    (   t   cython_inline(   R   R   t   _cython_inlineR   t   Cython.Build.InlineR<   R    R$   (   t   ft   argst   kwds(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   inline}   s    .c         C@  s   d d l  m } | |  ƒ S(   Ni    (   t   RuntimeCompiledFunction(   R>   RC   (   R?   RC   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   compileˆ   s    c         C@  s'   |  | } | d k  r# | d 7} n  d  S(   Ni    i   (    (   t   at   bt   q(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   cdiv   s    
c         C@  s+   |  | } |  | d k  r' | | 8} n  | S(   Ni    (    (   RE   RF   t   r(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   cmod”   s    
c         O@  sB   | j  d d  ƒ | s t ‚ t |  d ƒ r6 |  | Œ  S| d Sd  S(   Nt	   typecheckR3   i    (   t   popR   R$   t   hasattr(   t   typeR@   t   kwargs(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   cast   s
    
c         C@  s   d S(   Ni   (    (   R:   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   sizeof¥   s    c         C@  s
   |  j  j S(   N(   t	   __class__R   (   R:   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   typeof¨   s    c         C@  s   t  t |  ƒ ƒ |  g ƒ S(   N(   t   pointerRN   (   R:   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   address¬   s    c         K@  sI   |  d  t f k rA t |  d ƒ rA | t k	 r7 |  | ƒ S|  ƒ  Sn | Sd  S(   NR3   (   R   t   objectRM   t   _Unspecified(   RN   t   valueRA   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   declare¯   s
    !

t   _nogilc           B@  s    e  Z d  Z d „  Z d „  Z RS(   s'   Support for 'with nogil' statement
    c         C@  s   d  S(   N(    (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR4   »   s    c         C@  s
   | d  k S(   N(   R   (   R	   t	   exc_classt   exct   tb(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR8   ½   s    (   R   R   t   __doc__R4   R8   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRZ   ¸   s   	t   CythonMetaTypec           B@  s   e  Z d  „  Z RS(   c         C@  s   t  |  | ƒ S(   N(   R%   (   RN   t   ix(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __getitem__È   s    (   R   R   Ra   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR_   Æ   s   t   CythonTypeObjectt
   CythonTypec           B@  s   e  Z d  d „ Z RS(   i   c         C@  s'   x  t  | ƒ D] } t |  ƒ }  q W|  S(   N(   t   rangeRT   (   R	   t   nt   i(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   _pointerÏ   s    (   R   R   Rg   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRc   Í   s   t   PointerTypec           B@  s8   e  Z d d  „ Z d „  Z d „  Z d „  Z d „  Z RS(   c         C@  s«   t  | t t f ƒ rC g  | j D] } t |  j | ƒ ^ q |  _ nd t  | t ƒ r} g  | D] } t |  j | ƒ ^ qY |  _ n* | d  k s• | d k r¡ g  |  _ n t ‚ d  S(   Ni    (	   R   t	   ArrayTypeRh   t   _itemsRP   t	   _basetypet   listR   t
   ValueError(   R	   RX   RE   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR
   Ö   s    .+c         C@  s&   | d k  r t  d ƒ ‚ n  |  j | S(   Ni    s"   negative indexing not allowed in C(   t
   IndexErrorRj   (   R	   R`   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRa   à   s    c         C@  s8   | d k  r t  d ƒ ‚ n  t |  j | ƒ |  j | <d  S(   Ni    s"   negative indexing not allowed in C(   Rn   RP   Rk   Rj   (   R	   R`   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __setitem__å   s    c         C@  sL   | d  k r |  j r t St |  ƒ t | ƒ k r6 t S|  j oG | j Sd  S(   N(   R   Rj   R   RN   R   (   R	   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __eq__ê   s
    c         C@  s   d |  j  f S(   Ns   %s *(   Rk   (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR   ò   s    N(   R   R   R   R
   Ra   Ro   Rp   R   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRh   Ô   s
   
			Ri   c           B@  s   e  Z d  „  Z RS(   c         C@  s   d  g |  j |  _ d  S(   N(   R   t   _nRj   (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR
   ÷   s    (   R   R   R
   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRi   õ   s   t
   StructTypec           B@  s   e  Z e d  „ Z d „  Z RS(   c         K@  s¼   | t  k	 r‹ t | ƒ d k r- t d ƒ ‚ n  t | ƒ t |  ƒ k	 rX t d | ƒ ‚ n  x] | j j ƒ  D] \ } } t |  | | ƒ qh Wn- x* | j ƒ  D] \ } } t |  | | ƒ q˜ Wd  S(   Ni    s-   Cannot accept keyword arguments when casting.s   Cannot cast from %s(   RW   R    Rm   RN   t   __dict__t   itemst   setattr(   R	   t	   cast_fromt   datat   keyRX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR
   ý   s    c         C@  sC   | |  j  k r/ t |  j  | | ƒ |  j | <n t d | ƒ ‚ d  S(   Ns   Struct has no member '%s'(   t   _membersRP   Rs   t   AttributeError(   R	   Rx   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   __setattr__
  s     (   R   R   RW   R
   R{   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRr   û   s   t	   UnionTypec           B@  s   e  Z e d  „ Z d „  Z RS(   c         K@  sÔ   | t  k	 r| t | ƒ d k r- t d ƒ ‚ n  t | t ƒ rE | } q‚ t | ƒ t |  ƒ k ri | j } q‚ t d | ƒ ‚ n | } t | ƒ d k r£ t d ƒ ‚ n  x* | j ƒ  D] \ } } t	 |  | | ƒ q° Wd  S(   Ni    s-   Cannot accept keyword arguments when casting.s   Cannot cast from %si   s)   Union can only store one field at a time.(
   RW   R    Rm   R   t   dictRN   Rs   Rz   Rt   Ru   (   R	   Rv   Rw   t   datadictRx   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR
     s    	c         C@  sh   | d k r" t  j |  | | ƒ nB | |  j k rT i t |  j | | ƒ | 6|  _ n t d | ƒ ‚ d  S(   NRs   s   Union has no member '%s'(   Rc   R{   Ry   RP   Rs   Rz   (   R	   Rx   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR{   %  s
    #(   R   R   RW   R
   R{   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR|     s   c         @  s    d t  f ‡  f d †  ƒ  Y} | S(   Nt   PointerInstancec           @  s   e  Z ˆ  Z RS(    (   R   R   Rk   (    (   t   basetype(    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR   .  s   (   Rh   (   R€   R   (    (   R€   s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRT   -  s    c         @  s#   d t  f ‡  ‡ f d †  ƒ  Y} | S(   Nt   ArrayInstancec           @  s   e  Z ˆ  Z ˆ Z RS(    (   R   R   Rk   Rq   (    (   R€   Re   (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR   3  s   (   Ri   (   R€   Re   R   (    (   R€   Re   s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR%   2  s    c          @  sA   d t  f ‡  f d †  ƒ  Y} x ˆ  D] } t | | d  ƒ q# W| S(   Nt   StructInstancec           @  s   e  Z ˆ  Z RS(    (   R   R   Ry   (    (   t   members(    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR‚   9  s   (   Rr   Ru   R   (   Rƒ   R‚   Rx   (    (   Rƒ   s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   struct8  s    c          @  sA   d t  f ‡  f d †  ƒ  Y} x ˆ  D] } t | | d  ƒ q# W| S(   Nt   UnionInstancec           @  s   e  Z ˆ  Z RS(    (   R   R   Ry   (    (   Rƒ   (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR…   @  s   (   R|   Ru   R   (   Rƒ   R…   Rx   (    (   Rƒ   s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   union?  s    t   typedefc           B@  s,   e  Z d d  „ Z d „  Z d „  Z e Z RS(   c         C@  s   | |  _  | |  _ d  S(   N(   Rk   t   name(   R	   RN   Rˆ   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR
   H  s    	c         G@  s   t  |  j | Œ } | S(   N(   RP   Rk   (   R	   R:   RX   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR3   L  s    c         C@  s   |  j  p t |  j ƒ S(   N(   Rˆ   t   strRk   (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR   P  s    N(   R   R   R   R
   R3   R   R*   Ra   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR‡   F  s   		t
   _FusedTypec           B@  s   e  Z RS(    (   R   R   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyRŠ   U  s   c          G@  sq   |  s t  d ƒ ‚ n  d } xL |  D]@ } | t t t t f k rD Pn  t j | ƒ | k r" | } q" q" W| St ƒ  S(   Ns&   Expected at least one type as argumentiÿÿÿÿ(   t	   TypeErrort   py_intt   py_longt   py_floatt
   py_complext   type_orderingt   indexRŠ   (   R@   t   rankRN   t   result_type(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt
   fused_typeY  s    c         C@  s   t  d ƒ ‚ d S(   sC   Perhaps this should be implemented in a TreeFragment in Cython codes   yet to be implementedN(   R   (   t
   signaturesR@   RO   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   _specialized_from_argsn  s    R#   t   longt   floats   double complext   chart   shortt
   Py_UNICODEt   Py_UCS4t   longlongt
   Py_ssize_tt   size_tt
   longdoublet   doublet   longdoublecomplext   doublecomplext   floatcomplext   complext   bintt   voids	   long longs   long doubles   long double complexs   float complexNt   unicodes	   unsigned t   us   signed R   i   i   s   %s_%st   pt   CythonDotParallelc           B@  sJ   e  Z d  Z d d d g Z d	 d „ Z d d	 d d	 e d „ Z d „  Z RS(
   s%   
    The cython.parallel module.
    t   parallelt   pranget   threadidc         C@  s   t  S(   N(   t   nogil(   R	   t   num_threads(    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR¬   ¸  s    i    i   c         C@  s+   | d  k r | } d } n  t | | | ƒ S(   Ni    (   R   Rd   (   R	   R   R   R   t   scheduleR¯   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR­   »  s    	c         C@  s   d S(   Ni    (    (   R	   (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR®   Á  s    N(	   R   R   R^   t   __all__R   R¬   R   R­   R®   (    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyR«   ±  s
   s   cython.parallel(   R›   Rœ   (r   t
   __future__R    t   __version__t   __builtin__R   t   ImportErrorR‰   RV   R   R*   R   t   compiledRW   R,   R.   R0   R1   R2   R9   t   cclasst   ccallt   cfunct   returnst
   wraparoundt   boundscheckt   initializedcheckt	   nonecheckt   overflowcheckt   embedsignaturet	   cdivisiont   cdivision_warningst   always_allows_keywordst   profilet	   linetracet
   infer_typet   unraisable_tracebackst   freelistt   optimizationt   foldt
   use_switcht   unpack_method_callst   finalt   internalt   type_version_tagt   no_gc_cleart   no_gcR   R=   RB   RD   RH   RJ   RP   RQ   RS   RU   RY   RZ   R¯   t   gilRN   R_   Rb   Rc   Rh   Ri   Rr   R|   RT   R%   R„   R†   R‡   RŠ   R”   R–   R#   RŒ   R—   R   t	   NameErrorR˜   RŽ   R¥   R   t	   int_typest   float_typest   complex_typest   other_typest   gett   to_reprt   globalst   gst   builtinst   getattrRˆ   t   reprnamet   endswithR"   R¦   R§   t   tRd   Rf   Rg   t   p_voidt   NULLt   integralt   floatingt   numericR   R«   t   syst   modules(    (    (    s0   /bar/jli/Chip-seq/script/cython/Cython/Shadow.pyt   <module>   sÀ   
	)					A													!						!	"  0